Inheritance: Autosomal dominant (Romano-Ward syndrome) in genotype-positive families, with incomplete and variable penetrance: many carriers have a QTc in the normal range[7]; rare autosomal recessive (Jervell-Lange-Nielsen syndrome with congenital deafness, homozygous/compound heterozygous KCNQ1 or KCNE1 variants, nearly 100% penetrance).
Genetic yield: ~75% with comprehensive testing[1]. Up to 25% are gene-elusive; a negative test does not lower the threshold for treatment, and management is guided by phenotype: QTc, symptoms, triggers and family history (Asatryan et al 2024, Circ Arrhythm Electrophysiol)[8]
ClinGen-validated genes, with genotype-specific management (Zhu et al 2024, Schwartz & Crotti NEJM 2025)[7][2][9]
| Gene / subtype | % of genotype- positive[12][2] | Channel / mechanism | Arrhythmic triggers | ECG pattern | Key management points |
| KCNQ1LQT1 | 43–50% | IKs loss-of-function (K⁺) | Exercise, swimming (adrenergic) | Broad-based T wave | Beta-blockers most effective; nadolol preferred; restrict competitive swimming |
| KCNH2LQT2 | 32–40% | IKr loss-of-function (K⁺) | Auditory triggers, emotion, postpartum | Notched/bifid T wave | Higher risk in females; avoid alarm clocks; K⁺ supplementation; beta-blockers effective |
| SCN5ALQT3 | 10–13% | INa gain-of-function (Na⁺ delayed inactivation) | Rest/sleep, bradycardia | Long isoelectric ST segment | Mexiletine (off-label): shortens QTc, reduces events; beta-blockers less effective; pacemaker in selected cases |
| CALM1/2/3Calmodulinopathy | Rare (not tested) | Calmodulin (impaired Ca²⁺-channel inactivation) | Variable; often de novo | Extreme QTc prolongation | Severe early-onset, very high arrhythmic risk; early ICD; consider LCSD; flecainide may have a role; specialist centre; neurodevelopmental features |
| TRDN– | Rare (not tested) | Triadin; autosomal recessive | Exercise-triggered | T-wave abnormalities at rest | – |
| CACNA1CLQT8 (Timothy) | Rare (not tested) | ICaL gain-of-function (Ca²⁺) | – | – | Multiorgan syndrome: ASD, autism, syndactyly; very rare |
% column: ranges run from a referral cohort to the approximate shares in a 2025 review (about 50%, 40% and 10%)[2]. In the referral cohort, 903 of 2,500 unrelated patients referred for a five-gene test (KCNQ1, KCNH2, SCN5A, KCNE1, KCNE2) carried a putative LQTS variant; 9% carried more than one variant and are not counted in the gene rows, and calmodulin, triadin and CACNA1C were not tested[12]. Across cohorts, the three main genes account for about 90% of genotype-positive LQTS[1].
Gene-elusive LQTS (~11–25%): Multiple mechanisms, polygenic risk score contribution, environmental QTc modulators, exercise-induced repolarisation abnormalities, new causal genes not yet identified, or variant reclassification over time. The group is heterogeneous and also contains acquired QT prolongation, polygenic QT variation and misdiagnosis, so do not dismiss LQTS on a negative test and do not treat it as a single entity: where the clinical diagnosis is secure (QTc ≥480 ms on repeated ECGs, or Schwartz score >3), manage on phenotype as for genotype-positive disease. Referral to a specialised cardiogenetic clinic is recommended (Asatryan et al 2024)[8].
Modifier genes: Common variants modulate QTc and arrhythmic risk in individual patients, polygenic risk scores can refine risk stratification beyond the primary pathogenic variant (Schwartz & Crotti, NEJM 2025).